Goff Lab

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Lab Resources, Snippets, Tips, and Micro-Projects

  • Fetch all SRA records for a specific project and convert to fastqs. Author: Jared Slosberg
  • Collection of singularity containers and .def files for select projects
  • Comprehensive single cell workflow tutorial using kallisto, bustools, and RNAVelocity
  • Lincer Original in house (Rinn lab) lncRNA assembly, discovery, and annotation pipeline
  • TileIt: Simple python utility for designing tiled oligos along fasta sequences
  • Biolib: Python library of my own personal compbio utilities accumulated over the years. Author: Loyal
  • HCRProbeDesign: Python utility for the selection and design of optimized HCR v3.0 probes. Author: Loyal
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